/path/to/eQTLProbesFDR0.05.txt /path/to/output/ determineFDRThreshold|loadeqtls|generateeqtls 1000 1 fdr 0.01 8 0.95 DatasetName /path/to/genotypematrix.dat/ /path/to/expressiondata.txt /path/to/genotypetoexressioncoupling.txt false false